PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g23823.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 104aa    MW: 11551.1 Da    PI: 8.8704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g23823.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-074068129
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPk 29
                      r++ +  rE+ RRdr+N+ f+eL + l k
  LOC_Os02g23823.2 40 RKVQKADREKMRRDRLNEQFQELGSTLGK 68
                      5778899****************998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.29E-53267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-43968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-54069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQFQ  60
ELGSTLGKAQ LFVSNRLLPP SHCKCSCGFP CPTFDRPSYL KQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g23823.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g23823
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8326301e-172CT832630.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence.
GenBankCT8326311e-172CT832631.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626280.12e-39transcription factor bHLH121 isoform X1
TrEMBLA0A0E0JZD86e-39A0A0E0JZD8_ORYPU; Uncharacterized protein
TrEMBLQ67U214e-38Q67U21_ORYSJ; BHLH transcription factor
STRINGOS02T0433600-016e-39(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.27e-07bHLH family protein