PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g29550.1
Common NameLOC9271519, Os02g0499000, OSNPB_020499000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 223aa    MW: 25330.5 Da    PI: 9.3184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g29550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-1299140351
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  LOC_Os02g29550.1  99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 140
                       79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.26974153IPR001471AP2/ERF domain
PfamPF008471.8E-698141IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-898143IPR016177DNA-binding domain
SMARTSM003806.1E-598155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-7101145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSLP VDFPKPSDNE NSVEVAHPNI KPFSVHPLPL TKNSDVLLES  60
SNGSDSLKEE KNHYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI  120
HLGTVGTQEE AARLYDRAAF MCGREPNFEL SEEEKKELQN YTWKDFLDMT RDTITSKKQR  180
KVGLIRRNKT DSLVGQSDGD TEMINGGGSS HSEDGDAETS AS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.140870.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977212180.0
Expression AtlasB7ED44-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g29550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g29550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-167ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-167ethylene-responsive transcription factor-like protein At4g13040
TrEMBLB7ED441e-166B7ED44_ORYSJ; Os02g0499000 protein
TrEMBLI1P0M01e-166I1P0M0_ORYGL; Uncharacterized protein
STRINGOS02T0499000-011e-166(Oryza sativa)
STRINGORGLA02G0152600.11e-166(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.29e-47ERF family protein