PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g29550.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 197aa    MW: 22840.8 Da    PI: 8.9251
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g29550.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-1273114351
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                        +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  LOC_Os02g29550.3  73 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 114
                       79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.26948127IPR001471AP2/ERF domain
SMARTSM003806.1E-572129IPR001471AP2/ERF domain
PfamPF008471.4E-672115IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-872117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-775119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MLLNTCYLHW QRWFCLIKCT FLLQTKNSDV LLESSNGSDS LKEEKNHYYP GKEIKRRKRH  60
RRKQYVDQEP CIMRGVYFKN MKWQAAIKVD KKQIHLGTVG TQEEAARLYD RAAFMCGREP  120
NFELSEEEKK ELQNYTWKDF LDMTRDTITS KKQRKVGLIR RNKTDSLVGQ SDGDTEMING  180
GGSSHSEDGD AETSAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.140870.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977212180.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g29550.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g29550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-125ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-125ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D3F5F11e-125A0A0D3F5F1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YSK41e-125A0A0D9YSK4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G6W61e-125A0A0E0G6W6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NF711e-125A0A0E0NF71_ORYRU; Uncharacterized protein
STRINGOGLUM02G17700.11e-125(Oryza glumipatula)
STRINGORUFI02G18290.11e-125(Oryza rufipogon)
STRINGOBART02G17450.11e-125(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-46ERF family protein