PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g31850.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 756aa    MW: 87100.7 Da    PI: 8.6527
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g31850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.11.4e-1865144290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn YA+ +GF +r+sk++ + + g   +++f+C +eg++++ +          + tr+gCka++++++++ ++kw+v+ +++eHnH + 
  LOC_Os02g31850.1  65 FYNLYARFTGFGIRRSKNRFK-DGGVKSMQEFCCIREGRDKTVT---------GPPTRIGCKAMVRLNRSSeRQKWRVSAFVSEHNHGMK 144
                       9***************98876.899999**********988754.........569**************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1365143IPR004330FAR1 DNA binding domain
PfamPF105512.0E-18228296IPR018289MULE transposase domain
PROSITE profilePS5096610.163486522IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-5489519IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4497524IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MDSENSTERG DEDRSGQTMD IVPMERIVVE EVEDSVLLPS LLSDPTILVP KIGQTFDEDS  60
DGYAFYNLYA RFTGFGIRRS KNRFKDGGVK SMQEFCCIRE GRDKTVTGPP TRIGCKAMVR  120
LNRSSERQKW RVSAFVSEHN HGMKRDIQHT KHFRSHNFID EGTKRNIKEM MDNGMTPTAM  180
YGLVAGMHGG PSLTPFTRRA LTRMAYAIKR DECSKDVQKT LNFFREMQCR TIFGCALLRE  240
ETVEAFKWLF ETFTEAMHGK RPSAILTDNC HQMEVAIKAV WPETVHRVCK WHVLKNAKEN  300
LGNIYSKRSK FKEEFHRVLN EPQTEAEFEK AWKDLMEQYN LESSVYLRRM WGIRKRWAPA  360
YFRELFFAKM STTQRSESMN HVLKKYVKPS SSLNGFAKRY ENFYNDRIEA EDAEEHDTYN  420
EKVSTLTSSP IKKHASQVYT RGAFSRFKEQ FKLSFSYMVN QTLDQHVLQL VHIGDDTLQS  480
WGSKVFEVHV NMTEQELSCG CKLFEHLGII CSHIIRVLVQ YGFTEIPKKY ILKRWTKDAR  540
DCIPKHLEES YLNDKEAAAS RTYRNTLLHK SILDLVRLGG TSAETYEKTV EVLTKLVGEL  600
KVMSNSQEAN NNEIRRRGRT LGKKPAVESD DSSDSKDSMS DGICVGVEDD DGEDVSADED  660
FVVEDMIDVN EEDILPPEVR RSHGRPRSTR LMSKGETSSK AKKKKVGEST SNDESMNHAK  720
ERKQPTKQIR YCKLCGGHGH YRNTCGRKSS YERKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.123040.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g31850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g31850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064390.0AP006439.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0557A05, complete sequence.
GenBankAP0068500.0AP006850.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa257A21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ67IU60.0Q67IU6_ORYSJ; Far-red impaired response protein-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-71FAR1-related sequence 5