PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34270.1
Common NameOs02g0546800, OSJNBa0051E21.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 217aa    MW: 22518.4 Da    PI: 11.5575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1892141255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t e+Aa+a++aa ++++g
  LOC_Os02g34270.1  92 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTTEDAARAYDAAVLRFRG 141
                       7********.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2292150IPR016177DNA-binding domain
PROSITE profilePS5103225.72592149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3192151IPR001471AP2/ERF domain
SMARTSM003801.9E-3392155IPR001471AP2/ERF domain
PfamPF008471.7E-1292141IPR001471AP2/ERF domain
PRINTSPR003673.5E-1193104IPR001471AP2/ERF domain
CDDcd000185.56E-23100150No hitNo description
PRINTSPR003673.5E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAALFEAAET AAIVAALTRV IADGGRGGSG AGVPPPAPSL VVPPLAGTGG GRRVDVAREE  60
EMVGVVSAGD HTGEASVAAA GVVVAAPATA RRYRGVRRRP WGKWAAEIRD PRKAARVWLG  120
TFRTTEDAAR AYDAAVLRFR GRRAKLNFPE EASRPRRPWK GHDVDHMSCS PPSIANARFL  180
GSWIFGPPPP SRSVAAATTT LLGGSHGSNG ADNGRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2188149163ATERF1
3gcc_A2e-2188149163ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YYH8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624467.21e-149ethylene-responsive transcription factor ABR1
TrEMBLQ6YYH81e-148Q6YYH8_ORYSJ; AP2 domain-containing protein AP29-like
STRINGORUFI02G21040.11e-103(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-23related to AP2 6l