PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34520.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 179aa    MW: 20137.1 Da    PI: 7.2206
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.96.5e-0868103138
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 
                       +fY+ YA++vGFs+r+ ++kk   +g +  + f C ++
  LOC_Os02g34520.1  68 EFYECYAHRVGFSIRIGQHKKV--DGVVLYKCFLCANN 103
                       6*****************9998..9**********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-568102IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MARRLEFDDV HSDAESVTTG VPHRRAQYIK PQKSTSIPFC GSYFVPECDD SVVPHIGMTF  60
TDVESAKEFY ECYAHRVGFS IRIGQHKKVD GVVLYKCFLC ANNSLLRFGI GHDGHPLSVL  120
DLAMELYHCE KETIKRDFTN SVLKNLFAGK DFLWCCKPPK GHSVNLLRDI PVEGFGYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047751e-100AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10.
GenBankAP0054691e-100AP005469.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0040I22.
GenBankAP0149581e-100AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640678.12e-49protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0E0G7Y43e-92A0A0E0G7Y4_ORYNI; Uncharacterized protein
STRINGONIVA02G21900.15e-93(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15006915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.14e-09FAR1-related sequence 12