PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34970.1
Common NameLOC4329655, Os02g0555300, OsJ_07126, OSNPB_020555300, P0470G10.30
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 205aa    MW: 22802.5 Da    PI: 6.7308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.31.5e-3271241128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGf+F P+deelvv++L++kv+  +++  ++i+++  ++++Pw+L+ k+ +  ++wyfF++  +        +r+ ++g W+  g d++v 
  LOC_Os02g34970.1   7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGHWSPIGVDETVR 90 
                       79*************************999.89**************966667789******9855........577789************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +g++vglkktL f  g+ ++g +t+W+mhey+l
  LOC_Os02g34970.1  91 S-GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124
                       9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-454167IPR003441NAC domain
PROSITE profilePS5100540.57168IPR003441NAC domain
PfamPF023651.5E-208124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPHRYNPW ELNGKALQAG  60
NQWYFFCHLT QSRTSSNGHW SPIGVDETVR SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH  120
EYHLLDGDCV AGGSSNLTSS SSNRRSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG  180
TELSCLDEVF LSLDDYDEVS LPNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-33617316170NO APICAL MERISTEM PROTEIN
1ut4_B9e-33617316170NO APICAL MERISTEM PROTEIN
1ut7_A9e-33617316170NO APICAL MERISTEM PROTEIN
1ut7_B9e-33617316170NO APICAL MERISTEM PROTEIN
3swm_A8e-33617319173NAC domain-containing protein 19
3swm_B8e-33617319173NAC domain-containing protein 19
3swm_C8e-33617319173NAC domain-containing protein 19
3swm_D8e-33617319173NAC domain-containing protein 19
3swp_A8e-33617319173NAC domain-containing protein 19
3swp_B8e-33617319173NAC domain-containing protein 19
3swp_C8e-33617319173NAC domain-containing protein 19
3swp_D8e-33617319173NAC domain-containing protein 19
4dul_A9e-33617316170NAC domain-containing protein 19
4dul_B9e-33617316170NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166311950.0
Expression AtlasQ69ST3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084540.0AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626053.11e-150NAC domain-containing protein 104
SwissprotQ8GWK61e-61NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E0NGD11e-149A0A0E0NGD1_ORYRU; Uncharacterized protein
TrEMBLB8AJG11e-149B8AJG1_ORYSI; Uncharacterized protein
TrEMBLQ69ST31e-149Q69ST3_ORYSJ; Os02g0555300 protein
STRINGORUFI02G21510.11e-150(Oryza rufipogon)
STRINGOS02T0555300-011e-150(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-62xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]