PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g39540.2
Common NameLOC4329935, Os02g0608300, OSNPB_020608300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 819aa    MW: 92785 Da    PI: 8.9983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g39540.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.54e-1754137190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  LOC_Os02g39540.2  54 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELAILDHNHPVS 137
                       5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1554138IPR004330FAR1 DNA binding domain
PfamPF105513.7E-30257350IPR018289MULE transposase domain
PfamPF044342.2E-6537576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.371544580IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-5555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MMEAEEAFPP QRNPRRARRR DLNALDPSLE ESDGEDIGVP EVGMVFNNHT EVNRFYRRYA  60
RRVGFGVSVR RSSFSQEGTC LYLELMCCKG GRPRYEPKFR KRASSTTNCP AKIRVKLWGD  120
KLLHVELAIL DHNHPVSPAM ARFLNSYKQL SGPAKRRLRM GGPGAMPVEE PSKMPVDKLG  180
ALEELLFGES KHHSFVERGR LKFQPGDSEA LRLFFTRMQA KNANFFNVID LDDEGCVRNV  240
FWVDARSRSM YEFYNDVVTL DTSYVVGKYD MPLATFIGVN HHGQSVLLGC GLLSDETAET  300
YSWLFKAWIA CMYGNLPKAI ITGHCRGIQS AVAEVIPGVH HRICLFHIMR KATERLGGLS  360
EYAAISKAFQ KAVYDSLTID EFEGNWNALI TYNGLQGNDW LRSIYECRYS WVPVFLKDTF  420
WAGMSATQRN ENIIPFFDGY VDLKTTLKHF LGKYEMALQS KYEKEAQADF ETFHKQRPPV  480
SKFYMEEQLS KVYTHNIFKK FQDEIEAIMY CHVSFINVDG LISTFDVKEW IFLEDGKRTM  540
SKIFTVTNNT DKNDLTCICG GFQFNGILCR HSLSVLKFQQ VREIPPHYVL DRWKKDFRQL  600
HVMGRPSSDV VPNNRVDRYD YLSMRCLQLV DSAVLSDKYR LALRLVREME KFMLNSNTHD  660
DTQPRIKSRI PKANKPNTVV GQNLVNVGTY NGNDRPKATT EASSLTQGLD VQKGGAEKGI  720
VPAGYIGLPA NVQQFVGSQT AIRPSIVYMV PSGVDPQAFG NGVLMPVVYQ QMFQVPQQPN  780
GTMPDTSANG KRKRPRAQKP TEASEQSNGT PATGPTSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.164800.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329835500.0
Expression AtlasQ0DZN8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g39540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g39540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735270.0AK073527.1 Oryza sativa Japonica Group cDNA clone:J033046M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625321.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLQ0DZN80.0Q0DZN8_ORYSJ; Os02g0608300 protein
STRINGOS02T0608300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-135FAR1-related sequence 6