PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g41450.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 253aa    MW: 27232.3 Da    PI: 9.3953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g41450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.5e-322510553128
               NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev  +     ++++vg++ktLvfy+grap+g+kt Wvmhe+rl
  LOC_Os02g41450.1  25 LTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRGSsssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 105
                       3567************************************998666666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.7711124IPR003441NAC domain
SuperFamilySSF1019411.44E-3724124IPR003441NAC domain
PfamPF023658.1E-1628105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRVFVLSKFI VVAICAYTNA EVAKLTASEW YFFSFRDRKY ATGSRTNRAT KTGYWKATGK  60
DREVRGSSSS SSSRAVVGMR KTLVFYQGRA PNGVKTGWVM HEFRLDSPHS QPREDWVLCR  120
VFQKRKGDGD GPQDSGGAAS PTFTGSMSTT TLSQLQPPDH RRHAAAAAGG YYVGSQQLAA  180
GYDSAAGFAN PTQPAVPHYQ YGGAVIGFPE EFGGGGGVAD EYGFGTYLDL GFELDDTASV  240
LGGIRSFPQG WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-292812571166NO APICAL MERISTEM PROTEIN
1ut4_B5e-292812571166NO APICAL MERISTEM PROTEIN
1ut7_A5e-292812571166NO APICAL MERISTEM PROTEIN
1ut7_B5e-292812571166NO APICAL MERISTEM PROTEIN
3swm_A5e-292812574169NAC domain-containing protein 19
3swm_B5e-292812574169NAC domain-containing protein 19
3swm_C5e-292812574169NAC domain-containing protein 19
3swm_D5e-292812574169NAC domain-containing protein 19
3swp_A5e-292812574169NAC domain-containing protein 19
3swp_B5e-292812574169NAC domain-containing protein 19
3swp_C5e-292812574169NAC domain-containing protein 19
3swp_D5e-292812574169NAC domain-containing protein 19
4dul_A5e-292812571166NAC domain-containing protein 19
4dul_B5e-292812571166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.544160.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329903310.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g41450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g41450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051220.0AK105122.1 Oryza sativa Japonica Group cDNA clone:001-101-C03, full insert sequence.
GenBankAP0068470.0AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624505.10.0NAC domain-containing protein 92
TrEMBLA3A9721e-169A3A972_ORYSJ; Uncharacterized protein
STRINGORGLA02G0213000.11e-152(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-49NAC domain containing protein 74