PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43560.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 190aa    MW: 20495.6 Da    PI: 8.492
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.32.3e-11163187127
                       ---SS-EEEEEEE--TT-SS-EEEEEE CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrC 27 
                       ldDgy+WrKYGqK+vk+s +pr  Y C
  LOC_Os02g43560.1 163 LDDGYKWRKYGQKVVKNSLHPR--YIC 187
                       59*******************9..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-13148187IPR003657WRKY domain
SuperFamilySSF1182902.35E-10155187IPR003657WRKY domain
PROSITE profilePS5081113.035158189IPR003657WRKY domain
SMARTSM007746.4E-4163189IPR003657WRKY domain
PfamPF031061.6E-7164185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MHTCMEGGGQ LGTCLPNFYL LPDHHGMPLP PPLQLPCHPK LLQMPFDQED QPGIHGVMLS  60
SDHCGLYPLP ALPLSNSAAA AAATVALGKH SAAAGSMPNI GGAEEVATTV TKAGNESTTC  120
NGSTTWWRGS TMAAMGEKGK MKIRRKMREP RFCFQTRSEV DVLDDGYKWR KYGQKVVKNS  180
LHPRYICST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.534860.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329829290.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43560.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0729060.0AK072906.1 Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624962.11e-136probable WRKY transcription factor 12
SwissprotQ93WY45e-28WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A0E0NIJ91e-131A0A0E0NIJ9_ORYRU; Uncharacterized protein
STRINGORUFI02G27620.11e-131(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-29WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]