PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43820.1
Common NameLOC4330191, OJ1003_B06.21, Os02g0655200, P0519E06.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 345aa    MW: 36329.6 Da    PI: 5.7499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20154205256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  LOC_Os02g43820.1 154 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 205
                       8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32153213IPR001471AP2/ERF domain
SMARTSM003808.5E-38154218IPR001471AP2/ERF domain
PfamPF008471.6E-14154204IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22154213IPR016177DNA-binding domain
PROSITE profilePS5103224.25154212IPR001471AP2/ERF domain
CDDcd000181.90E-31154213No hitNo description
PRINTSPR003672.1E-13155166IPR001471AP2/ERF domain
PRINTSPR003672.1E-13194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDFSGDIDDL ISLQLLHDQL LGVEADACLP VAVHHDGVAA FAEHQQGFHP AAFLPQQPMT  60
MTPAGYVDMA NDQYLGAHAA AGEAEAVYRA AAAEPVMIRF GGEVSPVSDP RRPPLTISLP  120
PTSHAWAAAE AVHPAALLQA QTAAAAADPN DFRKYRGVRQ RPWGKFAAEI RDPKKRGSRV  180
WLGTYDTAIE AARAYDRAAF RMRGAKAILN FPNEVGSRGA DFLAPPPPPP PPTTSTHGKR  240
KRHETAAADP DVEVIGESSK SVKTETYTSP ASSSLASTTT STVTSSSTSP SPSSEAAACG  300
GGGGELFVPP MPSSWSWDQL EGFFGILSPL SPHPQMGFPE VAVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27155217668ATERF1
3gcc_A1e-27155217668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.389820.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO334400230.0
Expression AtlasQ6H6I3-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046760.0AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050060.0AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624058.10.0ethylene-responsive transcription factor 5
TrEMBLQ6H6I30.0Q6H6I3_ORYSJ; Os02g0655200 protein
STRINGORUFI02G27860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-24ethylene responsive element binding factor 5