PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g43970.1
Common NameLOC4330203, OJ1112_F09.1, Os02g0657000, OSNPB_020657000, P0519E06.31
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 226aa    MW: 23144.5 Da    PI: 5.0812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g43970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184998255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LOC_Os02g43970.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3249107IPR001471AP2/ERF domain
PROSITE profilePS5103222.99849106IPR001471AP2/ERF domain
PfamPF008471.9E-124998IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2249107IPR016177DNA-binding domain
SMARTSM003805.2E-3749112IPR001471AP2/ERF domain
CDDcd000181.88E-3050108No hitNo description
PRINTSPR003679.8E-115061IPR001471AP2/ERF domain
PRINTSPR003679.8E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDDSSFGSEP TTSSSGGEAP ASPPSTASSS SDGAGGKKKR PRKDGHHPTY RGVRMRSWGK  60
WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPDLAH ELPRPATAAP  120
KDVQAAAALA AAADFPASSA NAGASNNPDG SDDASAGSAS PPPPPDAADD ALFDLPDLLL  180
DLRYGPPSSG LSCASSWEDE VGLISGAGAA AAGVFRLEEP LLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17471061272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.506390.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329940390.0
Expression AtlasQ6H6G4-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g43970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g43970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076620.0AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAK1088300.0AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence.
GenBankAP0050060.0AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582790.0AY258279.1 Oryza sativa (japonica cultivar-group) CR102 putative AP2 domain-containing protein gene, complete cds.
GenBankAY3460940.0AY346094.1 Oryza sativa AP2 domain-containing protein Rap211 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624298.11e-157ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ77e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0E0GAM71e-156A0A0E0GAM7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NIP71e-156A0A0E0NIP7_ORYRU; Uncharacterized protein
TrEMBLQ6H6G41e-156Q6H6G4_ORYSJ; Os02g0657000 protein
TrEMBLQ949B21e-156Q949B2_ORYSA; AP2 domain-containing protein Rap211
STRINGORUFI02G28010.11e-156(Oryza rufipogon)
STRINGOS02T0657000-011e-156(Oryza sativa)
STRINGONIVA02G28990.11e-156(Oryza nivara)
STRINGOBART02G26590.11e-156(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]