PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g45054.3
Common NameLOC4330280, OJ1493_H11.12, Os02g0672100, OsJ_07891, OSNPB_020672100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 210aa    MW: 23171.5 Da    PI: 10.2682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g45054.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-0695117123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  LOC_Os02g45054.3  95 FVCEVCNKGFQREQNLQLHRRGH 117
                       89*******************88 PP
2zf-C2H213.70.00019172194123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  LOC_Os02g45054.3 172 WKCDKCSKRYAVQSDWKAHSKIC 194
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.76E-894117No hitNo description
PROSITE profilePS5015711.09495117IPR007087Zinc finger, C2H2
SMARTSM003550.004195117IPR015880Zinc finger, C2H2-like
PfamPF121711.0E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-5160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.76E-8167192No hitNo description
SMARTSM00355140172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ  60
AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR  180
YAVQSDWKAH SKICGTREYR CDCGTLFSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-22168209344Zinc finger protein JACKDAW
5b3h_F8e-22168209344Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.175680.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379902260.0
Expression AtlasQ6EU15-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g45054.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g45054
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626115.11e-154protein indeterminate-domain 4, chloroplastic
RefseqXP_015626116.11e-154protein indeterminate-domain 4, chloroplastic
RefseqXP_015626117.11e-154protein indeterminate-domain 4, chloroplastic
RefseqXP_015626118.11e-154protein indeterminate-domain 4, chloroplastic
SwissprotQ8GYC12e-89IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ9SCQ69e-90IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0D3F8R41e-154A0A0D3F8R4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YWA51e-153A0A0D9YWA5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GB501e-153A0A0E0GB50_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NJ251e-153A0A0E0NJ25_ORYRU; Uncharacterized protein
TrEMBLB8AGE91e-153B8AGE9_ORYSI; Uncharacterized protein
TrEMBLQ6EU151e-153Q6EU15_ORYSJ; Finger protein pcp1-like
STRINGOGLUM02G28000.11e-154(Oryza glumipatula)
STRINGORUFI02G28900.11e-154(Oryza rufipogon)
STRINGOS02T0672100-011e-154(Oryza sativa)
STRINGONIVA02G30280.11e-154(Oryza nivara)
STRINGOBART02G27440.11e-155(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.14e-89indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]