PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g45080.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 254aa MW: 28576.9 Da PI: 10.7736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g45080.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.9e-31	20	72	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt eLH++Fv+a++ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR LOC_Os02g45080.1 20 PRLRWTAELHRSFVRAIDCLGGQQKATPKLILQLMDVRGLTISHVKSHLQMYR 72 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-29	16	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.077	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-15	18	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	20	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGISGERKGA ARQYNRSKVP RLRWTAELHR SFVRAIDCLG GQQKATPKLI LQLMDVRGLT 60 ISHVKSHLQM YRGTRHGIGQ NDMQPQLHLK QHSFGSDEQS PKEFMCPPIK RAKVGTEASG 120 KYRCMEGSSD MRSSAPPAGT RYFIDDCMRL QEVSMDRRRS DQHDAAAAAR ARAPAAAASS 180 LHQALGFWVQ GRREEPFMVH QISKPKAHQL NHMVRNMKIS CKENHESRFF MSLVMVLLLI 240 SADLVSRETP SKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-17	21	76	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	21	76	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	21	76	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	21	76	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g45080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g45080

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004160	1e-151	AP004160.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1197_E09.
GenBank	AP004188	1e-151	AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBank	AP014958	1e-151	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-151	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624520.1	1e-174	uncharacterized protein LOC107276067
TrEMBL	I1P310	0.0	I1P310_ORYGL; Uncharacterized protein
STRING	ORGLA02G0236600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	LOC_Os02g45080.1