PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g47744.4
Common Name49D11.24, LOC4330464, Os02g0706400, OsJ_08088, OSNPB_020706400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 102aa    MW: 11353.2 Da    PI: 10.0986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g47744.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07451347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WTt   + + +a + +  +   +W  +ar +g g++  ++k ++ k+
  LOC_Os02g47744.4  4 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 51
                      7*****************99*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129311.481156IPR017884SANT domain
SuperFamilySSF466891.52E-11359IPR009057Homeodomain-like
CDDcd001670.00106452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSSWTTKQN KVFERALAIY DRDTPDRWQN VARAVGGGKS VDDVKRHYEK LIKDVDRIDS  60
TGGHQGSHYN SSNASSSSSS SSSNSRGSAN EDQRRRYHNF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-204601065RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.484851e-173callus| flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379910091e-173
Expression AtlasQ8S3Q7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g47744.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g47744
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1213861e-171AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627086.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_025878627.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_025878628.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_025878629.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_025878630.13e-68protein RADIALIS-like 3 isoform X2
RefseqXP_025878631.13e-68protein RADIALIS-like 3 isoform X2
SwissprotQ1A1731e-22RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ6NNN07e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLQ8S3Q78e-67Q8S3Q7_ORYSJ; Os02g0706400 protein
STRINGOS02T0706400-011e-67(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-24RAD-like 6
Publications ? help Back to Top
  1. Park YJ,Dixit A,Yoo JW,Bennetzen J
    Further evidence of microcolinearity between barley and rice genomes at two orthologous regions.
    Mol. Cells, 2004. 17(3): p. 492-502
    [PMID:15232225]