PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g51090.1

Common Name

LOC107276758, OJ1118_G04.12, OJ1734_E02.39, Os02g0744950, OsJ_08362, OSNPB_020744950

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Nin-like

Protein Properties

Length: 233aa MW: 27394.9 Da PI: 5.638

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g51090.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1.1e-26	113	163	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl LOC_Os02g51090.1 113 EKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 163 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.36	95	184	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-22	115	163	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEKWRFYGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT 60 LFDGDILSIW GDMKEDAYHR SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGEKTLTFEL 120 VSQYFCLPIK QAAQELNVGL TLLKRRCRVL GIPRWPHRKV KSLETIIKNV QELGMETGQD 180 EDNTRNAVEM LQQTKKLIEQ SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	226	KRRRL

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q6Z2T5

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g51090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g51090

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004114	0.0	AP004114.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1118_G04.
GenBank	AP005297	0.0	AP005297.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1734_E02.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627113.1	1e-174	protein RKD1
Refseq	XP_015627115.1	1e-174	protein RKD1
Swissprot	Q9M9U9	2e-40	RKD1_ARATH; Protein RKD1
TrEMBL	Q6Z2T5	1e-172	Q6Z2T5_ORYSJ; Os02g0744950 protein
STRING	OGLUM02G32960.1	1e-173	(Oryza glumipatula)
STRING	ORUFI02G34010.1	1e-173	(Oryza rufipogon)
STRING	ONIVA06G04700.1	1e-173	(Oryza nivara)
STRING	ORGLA02G0278600.1	1e-173	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-43	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	LOC_Os02g51090.1
Entrez Gene	107276758