PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g51310.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 260aa    MW: 28105 Da    PI: 12.046
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g51310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP41.54.9e-137717316120
               TCP  16 ggRdRR...vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaakskksqk 102
                       g R RR    Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a  a   l   +  +a +   ++s + s+++ + +    a s  ks     
  LOC_Os02g51310.1  77 GVRARRtstARLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGQPSEEQARTRkaTVAVSPGKSG---- 165
                       6677773335*********************************9999999998777773332222222222222222111222222222.... PP

               TCP 103 saasalnlakesrakara 120
                                 e+r k r+
  LOC_Os02g51310.1 166 ----------EKRRKTRS 173
                       ..........22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136920.40563126IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-976119IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MRQRRHGRRG GKAAAGARGA KAASIKIEQT KPRRISQELA QASAMEEVVV GKERKRPRCA  60
LVGVGGHDSD VADEPGGVRA RRTSTARLSV PTSIAFYDIQ DRLGVNRPSK SIEWLICAAL  120
VARLLLRPPQ RRPAPHPRRP SSGQPSEEQA RTRKATVAVS PGKSGEKRRK TRSGCAARKA  180
ERIAKLRVWR EGWMPRREAS TSATSGGQSW IRKPSTPGSG DSCSCSDAKP GKRRWAEKAG  240
EVVAREADGA ERGGGGRRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.794593e-86callus| flower| leaf| panicle| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g51310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g51310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2X9L71e-124A2X9L7_ORYSI; Uncharacterized protein
STRINGONIVA06G04550.11e-114(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1996588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-10TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3