PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g54050.1
Common NameLOC107278604, Os02g0781300, OSNPB_020781300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 212aa    MW: 22783.5 Da    PI: 6.6764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g54050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-171768156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ykGVr++k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa   l+g+
  LOC_Os02g54050.1 17 KKYKGVRRRK-WGKWVSEIRLPNS---RDRIWLGSYDSPEKAARAFDAAFVTLRGH 68
                      59*****998.**********933...5********************98888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.47E-241780No hitNo description
SMARTSM003801.1E-281884IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-181880IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-261880IPR001471AP2/ERF domain
PfamPF008471.2E-101866IPR001471AP2/ERF domain
PROSITE profilePS5103221.7991878IPR001471AP2/ERF domain
PRINTSPR003676.6E-91930IPR001471AP2/ERF domain
PRINTSPR003676.6E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMSSSSPVVA SPPEMEKKYK GVRRRKWGKW VSEIRLPNSR DRIWLGSYDS PEKAARAFDA  60
AFVTLRGHGA AGADLNFPDS PPSCDARSSD PRQVQAAALS HANRAHVTPQ QAAAALMSPP  120
SLSPPPGFAT GSEVVAPAVR ADGSIDWRPV MAHPPPLYSP PGWGGGHAYD FLQPPPPSPP  180
LPSCDDDMVD VVDESSASLW SFDTRDSYFR Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0VQ94
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g54050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g54050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042570.0AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624935.11e-150ethylene-responsive transcription factor ERF018
TrEMBLA0A0P0VQ941e-149A0A0P0VQ94_ORYSJ; Os02g0781300 protein
STRINGOS02T0781300-001e-150(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-32ERF family protein