PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g57550.1
Common NameLOC107280032, OJ1119_A01.7, OsJ_08911, P0474F11.22
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 196aa    MW: 20432.9 Da    PI: 5.4091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g57550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C + F++   L  H+++H
  LOC_Os02g57550.1 47 YNCTFCRRGFPTAQALGGHMNVH 69
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-64473No hitNo description
Gene3DG3DSA:3.30.160.603.8E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-64771IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4714774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSQKTSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ  60
ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV RLFRPPASGG SEDAAASTAA  120
GGGASLRSRT AEPAPQELRL FGRGAGRREE GGGRDRRDRY GCCSKDGDGN GGHDHGEEEE  180
LDLELRLGGS GSAGS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K704
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g57550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g57550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040200.0AP004020.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1119_A01.
GenBankAP0048780.0AP004878.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0474F11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624572.11e-135zinc finger protein 11
TrEMBLQ6K7041e-134Q6K704_ORYSJ; Uncharacterized protein
STRINGORUFI02G39170.11e-134(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-12C2H2 family protein