PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g58670.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 103aa    MW: 10481.7 Da    PI: 6.5205
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g58670.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1223.5e-076794128
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaei 28
                      e+e ++++r++kNRe+A rsR+RK+ ++
  LOC_Os02g58670.2 67 EEEERKTIRMMKNRESALRSRARKRVRT 94
                      678899******************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-76595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MAEQLGGVGS PQLSLSSCSS FLSISSAGTS AADGAPHLSL GVGGAEELDL LLQVGIGGGG  60
GGGGDEEEEE RKTIRMMKNR ESALRSRARK RVRTSNPFPH TI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.183541e-149callus| leaf| panicle| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g58670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g58670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052901e-172AP005290.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1282_E10.
GenBankAP0149581e-172AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623884.19e-57protein FD
TrEMBLA0A0D3FCJ02e-55A0A0D3FCJ0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GFF82e-55A0A0E0GFF8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NNE12e-55A0A0E0NNE1_ORYRU; Uncharacterized protein
TrEMBLA2XBE02e-55A2XBE0_ORYSI; Uncharacterized protein
TrEMBLI1P5X32e-55I1P5X3_ORYGL; Uncharacterized protein
TrEMBLQ6ESB32e-55Q6ESB3_ORYSJ; Os02g0833600 protein
STRINGORUFI02G40230.14e-56(Oryza rufipogon)
STRINGOS02T0833600-014e-56(Oryza sativa)
STRINGONIVA02G41380.14e-56(Oryza nivara)
STRINGORGLA02G0337900.14e-56(Oryza glaberrima)
STRINGOBART02G38520.14e-56(Oryza barthii)