PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g02900.1
Common NameLOC4331436, OJ1705B08.4, Os03g0120900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 312aa    MW: 33772.2 Da    PI: 10.2877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g02900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.68.9e-3237141199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++      ++e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+ 
  LOC_Os03g02900.1  37 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEa 129
                       89****************************55567889*************************************************665888 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        +++l++ ++r+
  LOC_Os03g02900.1 130 ARGRLFIDWRRR 141
                       9999**999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-4030142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-2934125IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-2635122No hitNo description
PfamPF023621.3E-2837141IPR003340B3 DNA binding domain
SMARTSM010192.6E-2137142IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36737142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEFITPIVRP ASAAAGGGEV QESGGRSLAA VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE  60
KYFPLDAASN EKGLLLSFED RTGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV  120
SFGRGVGEAA RGRLFIDWRR RPDVVAALQP PTHRFAHHLP SSIPFAPWAH HHGHGAAAAA  180
AAAAGARFLL PPSSTPIYDH HRRHAHAVGY DAYAAATSRQ VLFYRPLPPQ QQHHPAVVLE  240
SVPVRMTAGH AEPPSAPSKR VRLFGVNLDC ANSEQDHAGV VGKTAPPPLP SPPSSSSSSS  300
GKARCSLNLD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-65321443116B3 domain-containing transcription factor NGA1
5os9_B3e-65321443116B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.319890.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329915760.0
Expression AtlasQ8LMR9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g02900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g02900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053630.0AC105363.2 Oryza sativa Japonica Group chromosome 3 clone OJ1705B08, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628752.10.0B3 domain-containing protein Os03g0120900
SwissprotQ8LMR90.0Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D3FD450.0A0A0D3FD45_9ORYZ; Uncharacterized protein
TrEMBLI1P6Z70.0I1P6Z7_ORYGL; Uncharacterized protein
STRINGOS03T0120900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]