PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g03164.3
Common NameHOS66, LOC4331449, Os03g0123500, OsJ_008895, OsJ_008896, OsJ_09228
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 197aa    MW: 22831.9 Da    PI: 6.6856
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g03164.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.9e-081361791454
                       HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  LOC_Os03g03164.3 136 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 179
                       5555555222469*****************************87 PP
2ELK26.21.8e-09100121122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++ ++++E++
  LOC_Os03g03164.3 100 ELKIELKQGFKSRIEDVREEIL 121
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.4E-11343IPR005541KNOX2
PfamPF037913.5E-12342IPR005541KNOX2
PROSITE profilePS512139.132100120IPR005539ELK domain
PROSITE profilePS5007111.693120183IPR001356Homeobox domain
SuperFamilySSF466892.48E-16122187IPR009057Homeodomain-like
SMARTSM003894.9E-10122187IPR001356Homeobox domain
CDDcd000867.18E-11123184No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25127186IPR009057Homeodomain-like
PfamPF059205.2E-18140179IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQAQYMMLLC SFREQLQQHV RVHAVEAVMA CREIEQSLQD LTGATLEEGT GATMSEDEDE  60
TAPMLEGPMD MGSDGHDLMG FGPLMPTDSE RSLMERVRQE LKIELKQGFK SRIEDVREEI  120
LRKRRAGKLP GDTTTILKQW WQQHSKWPYP TEDDKAKLVE ETGLQLKQIN NWFINQRKRN  180
WHNNSQTSTL KSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176195RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.41640.0flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO141491400.0
Expression AtlasQ94LW3-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g03164.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g03164
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.11e-143homeobox protein knotted-1-like 3
SwissprotQ94LW31e-145KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0D3FD671e-144A0A0D3FD67_9ORYZ; Uncharacterized protein
TrEMBLB8ALY81e-142B8ALY8_ORYSI; Uncharacterized protein
STRINGORUFI03G01570.21e-143(Oryza rufipogon)
STRINGOS03T0123500-021e-143(Oryza sativa)
STRINGONIVA03G01480.21e-143(Oryza nivara)
STRINGORGLA03G0016000.11e-143(Oryza glaberrima)
STRINGOBART03G01840.31e-145(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-107KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    Expression of novel homeobox genes in early embryogenesis in rice.
    Biochim. Biophys. Acta, 1999. 1444(3): p. 445-50
    [PMID:10095070]
  2. Ito Y,Hirochika H,Kurata N
    Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice.
    Gene, 2002. 288(1-2): p. 41-7
    [PMID:12034492]
  3. Jain M,Tyagi AK,Khurana JP
    Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.
    FEBS J., 2008. 275(11): p. 2845-61
    [PMID:18430022]