PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g08460.1
Common Namecap2, LOC4331843, Os03g0182800, OSNPB_030182800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 327aa    MW: 35853 Da    PI: 6.1932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g08460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-19120170155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  LOC_Os03g08460.1 120 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 170
                       89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.22E-28120178No hitNo description
PfamPF008471.5E-12120170IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21120179IPR016177DNA-binding domain
SMARTSM003802.0E-32121184IPR001471AP2/ERF domain
PROSITE profilePS5103221.97121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-28121178IPR001471AP2/ERF domain
PRINTSPR003672.0E-7122133IPR001471AP2/ERF domain
PRINTSPR003672.0E-7144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MCGGAILADF TPARVPRRLT AAELLPVTPT PPAAERRTTR KRKSDVDFEA EFELFEDDDD  60
DDEFELSDDG DESLAVSCVS SPKSKAVPSF SFSSDVSSSS RPRRRVAAAA AGRRKASKKS  120
KYRGVRRRPS GRFAAEIRDP KKGRRVWLGT YGSAEEAAMA YDREARRIRG KGARLNFPRD  180
GDGSPRRSND RPCWTIDLNL PAAAVSGDDD DAMAVDAADA DAGSAGRAAA YADQEALSAA  240
KCKIKQCPRD EQMASATPEL MEEDASSSRN MVPLSMALQL QYAAMIAECD REMEEIAAVE  300
RDLERRRRQV FERRGHLVRQ ASLLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19117178163ATERF1
3gcc_A2e-19117178163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843TRKRKS
2113128RKASKKSKYRGVRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.111200.0callus| flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO330870600.0
Expression AtlasQ7XBH8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g08460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g08460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731330.0AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence.
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLQ7XBH80.0Q7XBH8_ORYSJ; AP2 domain containing protein, expressed
STRINGOS03T0182800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-22ERF family protein