PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g13600.1
Common NameLOC4332200, Os03g0239300, OSNPB_030239300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 241aa    MW: 24529 Da    PI: 7.2531
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g13600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002380102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C + F ++  L  H++ H
  LOC_Os03g13600.1  80 FTCNYCQRKFFSSQALGGHQNAH 102
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-678107No hitNo description
PROSITE profilePS5015711.32380107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKSSSQEAGE EVSEISSQAA SNNNETCNSS SGKVSLDLSL TVAAAAAAAA SATESSTTDS  60
GGTRPAATAT ATAREPARVF TCNYCQRKFF SSQALGGHQN AHRRERTLAR RAVRLDAFPY  120
GYADVASLPL YGAGLYPIGI QAHASVHHHH PGVAAPAGRA ELRSARALLG PMPFFVQAAG  180
DEDASFGWPG SFRPPPTAAT TIPAAAAAPV AVNSGSSNSN HGGSVVVQAA ADEPDLTLRL  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.212820.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329760560.0
Expression AtlasQ10PC4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g13600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g13600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1189810.0AC118981.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060E18, from chromosome 3, complete sequence.
GenBankAK0717680.0AK071768.1 Oryza sativa Japonica Group cDNA clone:J023110G13, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628354.11e-173zinc finger protein 7
RefseqXP_025879942.11e-173zinc finger protein 7
TrEMBLA0A0E0GJG51e-172A0A0E0GJG5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NS751e-172A0A0E0NS75_ORYRU; Uncharacterized protein
TrEMBLA2XED31e-172A2XED3_ORYSI; Uncharacterized protein
TrEMBLQ10PC41e-172Q10PC4_ORYSJ; C2H2 transcription factor
STRINGORUFI03G10130.11e-172(Oryza rufipogon)
STRINGOS03T0239300-011e-172(Oryza sativa)
STRINGONIVA03G10440.11e-172(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-11zinc finger protein 4