PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g18330.1
Common NameOs03g0294300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 215aa    MW: 23714 Da    PI: 10.3133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g18330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.93.1e-0920102284
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                       W++ e+ aLi+a    + + +rg l +++W++ ++++      + r  +r+  qC+ + + l+ ryk++ +          s +++f++
  LOC_Os03g18330.1  20 WSDGETAALIDAWGPPHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 102
                       ***************************************999888889*******************98665553......24555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1618105No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSSKPSPQQ HQQQRANEWW SDGETAALID AWGPPHVARS RGPLPAKDWR AAASAVNARR  60
AAAGRRHNRT RAQCRARVQT LKERYKRELA KPPPSGWRHF SRLQEFLLAG PPPGFPPKTM  120
PPASVKKEEE EECQDEAVGG GGGSGGLLGR WVVPTRPRNG AAAWCPVGVV VTKLAEVYER  180
VELARLEVEK EKVAMEMEKA MQEAVKLKEE KLDT*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154524300.0
Expression AtlasQ10MV1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g18330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g18330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370720.0AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880270.11e-153uncharacterized protein LOC4332524
TrEMBLA0A0E0NTR21e-152A0A0E0NTR2_ORYRU; Uncharacterized protein
TrEMBLQ10MV11e-152Q10MV1_ORYSJ; Os03g0294300 protein
STRINGORUFI03G14360.11e-153(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Representative plantOGRP1412422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.21e-07sequence-specific DNA binding transcription factors