PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g18340.1
Common NameOs03g0294500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 256aa    MW: 27438.1 Da    PI: 10.3418
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g18340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.92.7e-082194270
          trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70
                      W++ e+ aL++a   ++ r   g l+ ++W++ ++++     +++   r+  qCk++++ l+kr k+++ ++k+
  LOC_Os03g18340.1 21 WSDGETSALLDAWGPRHIRAAGGPLRTADWRACAAAVtarraAAGRAPRTVDQCKNRLDYLKKRLKAERSRSKG 94
                      *************************************9999888889********************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-132096No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATRRRAAAP PQPPAWTPEP WSDGETSALL DAWGPRHIRA AGGPLRTADW RACAAAVTAR  60
RAAAGRAPRT VDQCKNRLDY LKKRLKAERS RSKGAPAPPP PPPSVDRLRA LLRLAPSVPP  120
GFTSRGGAMP KVGEEEQEEE EEKAESFAAP LPRSWPSVPK RPRTAVALLP LSSSSGHQHG  180
DGGGTPCTEV AAALDRLAGT YERVEVAKQK EATRLEERRL EAMRDLEIER MRILVDVAIS  240
ASAVADTATA ASSSW*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154524320.0
Expression AtlasQ10MV0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g18340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g18340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370720.0AC137072.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629393.11e-177uncharacterized protein LOC4332525
TrEMBLA0A0E0GL551e-177A0A0E0GL55_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NTR31e-177A0A0E0NTR3_ORYRU; Uncharacterized protein
TrEMBLI1PAC61e-177I1PAC6_ORYGL; Uncharacterized protein
TrEMBLQ10MV01e-177Q10MV0_ORYSJ; Os03g0294500 protein
STRINGORUFI03G14370.11e-178(Oryza rufipogon)
STRINGONIVA03G14960.11e-178(Oryza nivara)
STRINGORGLA03G0132200.11e-178(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140221313
Representative plantOGRP1277422