PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g19630.1
Common NameLOC107280281
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 190aa    MW: 22195.5 Da    PI: 11.8689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g19630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-113378348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                      +WT+eEd  l ++  + G+++W++ a+ m+  +R++ qc++rw+++l
  LOC_Os03g19630.1 33 AWTPEEDAVL-RLAMENGSRHWRRMAAQMPrRRRSPAQCRDRWRDHL 78
                      7*****9877.5667899999***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5152682IPR017930Myb domain
SMARTSM007171.4E-63080IPR001005SANT/Myb domain
PfamPF002491.9E-103378IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-1533132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-153390IPR009057Homeodomain-like
CDDcd001671.17E-73378No hitNo description
SMARTSM007173.783134IPR001005SANT/Myb domain
PROSITE profilePS500905.80887132IPR017877Myb-like domain
PfamPF139213.9E-587134No hitNo description
Gene3DG3DSA:1.10.10.608.0E-591131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDMELSSSST TVASSPASPP LGRCVVRIRL PPAWTPEEDA VLRLAMENGS RHWRRMAAQM  60
PRRRRSPAQC RDRWRDHLAR DVFHRHFTSA DDTELARLCL HLDDAGHRWK HVSRAVYGRS  120
SCAVKRRWRE LRKSDAFLSA LWRPRTTAPQ PMRRSRRRVD ELWMSARARV VAHLIDDLLF  180
QEWFLLVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A2e-12251281103MYB21
3osf_D2e-12251281103MYB21
3osg_A2e-12251281103MYB21
3osg_D2e-12251281103MYB21
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10MG5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g19630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g19630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370710.0AC137071.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence.
GenBankAF4614240.0AF461424.2 Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629497.11e-132transcription factor MYB44-like
TrEMBLQ10MG51e-131Q10MG5_ORYSJ; Myb-like DNA-binding domain containing protein
STRINGORGLA03G0143400.11e-101(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Representative plantOGRP10428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-11myb domain protein r1