PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g25304.1
Common NameOsJ_10983
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 178aa    MW: 19833.5 Da    PI: 10.7563
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g25304.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.3e-1149101348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                       +W +eEd  l+++ ++ G ++W+++a+ m         +R++ qc++rw+++l
  LOC_Os03g25304.1  49 AWMPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrPRRSPGQCRDRWRDHL 101
                       7*************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.81442105IPR017930Myb domain
SMARTSM007173.8E-846103IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-1449124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-1449118IPR009057Homeodomain-like
CDDcd001670.0018149101No hitNo description
PfamPF139219.9E-1150118No hitNo description
PROSITE profilePS500905.935102156IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MALQGMEQEA AGQPPASAAF PSSAEAAAAA ASPTSGGKRI VLRIRIPPAW MPEEDACLAR  60
LAAENGFRHW RRVAEGMAAA RSGRRPRRSP GQCRDRWRDH LARDVYHRPF TADDDAELAR  120
LLLKRDGDGE RSWKDISRAA YCRTSRGMRR RWGELRDSDA FLRKLWCPPP PPMQPSC*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10KW0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g25304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g25304
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAC1444270.0AC144427.1 Oryza sativa Japonica Group chromosome 3 clone OSJNAb0012F18, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645625.12e-58PREDICTED: transcription factor MYB44-like
TrEMBLQ10KW01e-122Q10KW0_ORYSJ; Myb-like DNA-binding domain containing protein, expressed
STRINGORUFI03G19310.11e-122(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Representative plantOGRP10428310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-06myb domain protein 73