PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g26210.2
Common NameLOC4332972, Os03g0379300, OsJ_11051, OSJNBa0013O08.3, OSNPB_030379300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 253aa    MW: 27890.5 Da    PI: 5.7676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g26210.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000133786154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r++ ++erE+  R ++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  LOC_Os03g26210.2 37 RKVHKSEREKLKRGHLNDLFGELGNMLEAD----RQSNGKACILTDTTRILRDL 86
                      678899*********************997....57788899999888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1134105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-934106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.2643686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVPSERGDVA TAIRPAAADK LVHGPISDKK CRKKVPRKVH KSEREKLKRG HLNDLFGELG  60
NMLEADRQSN GKACILTDTT RILRDLLSQV KSLRQENSTL QNESNYVTME RNELQDENGA  120
LRSEISDLQN ELRMRATGSP GWGHGATGSP LPVPPSPGTV FPSQQPMQPS PMTTSTVFPL  180
QQPLPQPTVI EPSARQPLEL KLFLEAPPAE DPEPSEDQEA PNNVARPQPR YPTEASSWPI  240
SLGLPRMEDE QM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.92161e-165callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ10KL8
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g26210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g26210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615150.0AK061515.1 Oryza sativa Japonica Group cDNA clone:006-309-H04, full insert sequence.
GenBankAK0687040.0AK068704.1 Oryza sativa Japonica Group cDNA clone:J013159M16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633301.10.0transcription factor BHLH062-like
RefseqXP_015633302.10.0transcription factor BHLH062-like
SwissprotQ69V106e-76BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A0E0NVT00.0A0A0E0NVT0_ORYRU; Uncharacterized protein
TrEMBLB8AQJ00.0B8AQJ0_ORYSI; Uncharacterized protein
TrEMBLQ10KL80.0Q10KL8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGORUFI03G20000.10.0(Oryza rufipogon)
STRINGOS03T0379300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-29bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]