PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g33090.1
Common NameLOC4333227, Os03g0445700, OsJ_11413, OSJNBa0035N15.7, OSNPB_030445700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 205aa    MW: 21037.1 Da    PI: 8.1436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g33090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-302103197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+pe +r+++++sl+yeA  r+ +Pv+Gavg+++++++ l+
  LOC_Os03g33090.1   2 SCNGCRVLRKGCSDGCVLRPCLqwidaADAQGHATVFVAKFFGRAGLLSFISAVPEAQRPALFQSLLYEAAGRTINPVHGAVGLLWTGNWPLC 94 
                       6*********************9998656778************************************************************* PP

            DUF260  89 qlkaelall 97 
                       q+++e++l+
  LOC_Os03g33090.1  95 QAAVETVLR 103
                       ***999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2121107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDGCVLR PCLQWIDAAD AQGHATVFVA KFFGRAGLLS FISAVPEAQR  60
PALFQSLLYE AAGRTINPVH GAVGLLWTGN WPLCQAAVET VLRGGAIGPL PELGGACGGA  120
GGDLYGAAKR NGGWSTFSTA KRVRKAEVPE APSCDLGLCL SPGSPPAVGE RKPALRPGTP  180
SMSSDESGTT TGGERDPVLL NLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.532590.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329816470.0
Expression AtlasQ6AV61-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g33090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g33090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716240.0AK071624.1 Oryza sativa Japonica Group cDNA clone:J023106M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629353.11e-145LOB domain-containing protein 37
SwissprotQ9FN113e-69LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0D3FKA51e-144A0A0D3FKA5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NX241e-144A0A0E0NX24_ORYRU; Uncharacterized protein
TrEMBLI1PCP21e-144I1PCP2_ORYGL; Uncharacterized protein
TrEMBLQ6AV611e-144Q6AV61_ORYSJ; Expressed protein
STRINGORUFI03G23490.11e-145(Oryza rufipogon)
STRINGOS03T0445700-011e-145(Oryza sativa)
STRINGORGLA03G0213800.11e-145(Oryza glaberrima)
STRINGOBART03G22820.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-70LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]