PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g37670.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22611.2 Da    PI: 10.242
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g37670.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.37.2e-122311342
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42
                      f kR++ ++KKA+ELS+L +++++v+++++
  LOC_Os03g37670.1  2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31
                      89**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.886131IPR002100Transcription factor, MADS-box
PfamPF003192.4E-11231IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-14276IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMVW PSVPEARRVI ERFRALPQKD  60
QYENTTNLEG FLKQRIANLQ EKVDKAKHEN DELETKLLLL NSLDCCLPSL VGLTVKQITS  120
LNSMVEERLK KLRGNGLLAT PVPTSSKKKI IWDVRYNLKA RYVTDDSAKN GSPRLRCTPA  180
TSSQRQSSPE FRHRRCLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g37670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g37670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0933120.0AC093312.7 Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879443.11e-103agamous-like MADS-box protein AGL80
TrEMBLQ10HW81e-121Q10HW8_ORYSJ; SRF-type transcription factor family protein
STRINGORGLA03G0221500.11e-119(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.13e-16M-type_MADS family protein