PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g37900.1
Common NameOSJNBa0008D12.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 138aa    MW: 15192.7 Da    PI: 8.2466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g37900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS61.91.3e-1938134194
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPi 90 
                       lv+ L++cA+ vs+g++e+a  +Larl e+as +g  p++R+aayf e L  r++r++++++++ pp+e +++    ++ ++al++++ ++Pi
  LOC_Os03g37900.1  38 LVRMLTACADSVSAGNHEAAIYYLARLCEMASLAGpMPIHRVAAYFIEVLTLRVVRMWPHMFNISPPRELTNDAfsGDDDAMALRILNTITPI 130
                       6789*******************************99*********************************988798999************** PP

              GRAS  91 lkfs 94 
                       l ++
  LOC_Os03g37900.1 131 LLLG 134
                       9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.82712137IPR005202Transcription factor GRAS
PfamPF035144.3E-1738134IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGAGRRRRQK MMPPPLSNFD ARNGVPTPGQ AEQETMELVR MLTACADSVS AGNHEAAIYY  60
LARLCEMASL AGPMPIHRVA AYFIEVLTLR VVRMWPHMFN ISPPRELTND AFSGDDDAMA  120
LRILNTITPI LLLGKHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891101e-104callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154661351e-104
Expression AtlasQ75G81-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g37900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g37900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1464680.0AC146468.1 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881992.12e-50protein DWARF AND LOW-TILLERING-like
SwissprotQ9LWU91e-51DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A0E0NXF93e-97A0A0E0NXF9_ORYRU; Uncharacterized protein
TrEMBLQ75G813e-97Q75G81_ORYSJ; Scarecrow transcription factor family protein, putative
STRINGORUFI03G24530.15e-98(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2404766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-24GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]