PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g41330.1
Common NameLOC4333430, Os03g0609500, OSNPB_030609500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 233aa    MW: 23618.6 Da    PI: 6.4849
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g41330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71.1e-292104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+
  LOC_Os03g41330.1   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLC 94 
                       6*********************9999888899************************************************************* PP

            DUF260  89 qlkaelallk 98 
                       q++a+++l++
  LOC_Os03g41330.1  95 QAAADAVLRG 104
                       ****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6821107IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-242100IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGDSLRAL SAVPAAFTDR  120
DMAGLYGNVG AAAGTSSSSP DNDNSSASAA PRRKRPRNNG AGAGVGQQQL PHAVAAVLQS  180
CELDLCLTPV SPPAVQLVGG GGGASDEHST TTCEEASDGD GAGAPTLLNL FS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.201350.0callus| leaf| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75HN5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g41330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g41330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880020.0AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628211.11e-167LOB domain-containing protein 38
TrEMBLA0A0D9ZAG71e-166A0A0D9ZAG7_9ORYZ; Uncharacterized protein
TrEMBLQ75HN51e-166Q75HN5_ORYSJ; LOB domain protein 40, putative, expressed
STRINGOGLUM03G26640.11e-167(Oryza glumipatula)
STRINGOS03T0609500-011e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-56LOB domain-containing protein 37