PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g43840.1
Common NameB1394A07.19, LOC4333536, LOL3, Os03g0639600, OsJ_11851, OSJNBb0029I19.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 187aa    MW: 19466.5 Da    PI: 8.4346
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g43840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-13731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr +L+YP GApsV+CalC+++
  LOC_Os03g43840.1  7 CHGCRSVLRYPSGAPSVCCALCQAI 31
                      ***********************97 PP
2zf-LSD139.68.4e-134872125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+Y+r+A  VRC++C tV
  LOC_Os03g43840.1 48 CGGCRTLLMYTRNADTVRCSCCSTV 72
                      ***********************99 PP
3zf-LSD148.91.1e-1586109124
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                       Cg+Crt+L+YP+GApsV+Ca+C+ 
  LOC_Os03g43840.1  86 CGQCRTTLMYPYGAPSVKCAICHY 109
                       **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-12434IPR005735Zinc finger, LSD1-type
PfamPF069436.0E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.6E-144575IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-104872IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.3E-1283111IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1486110IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQSQIVCHGC RSVLRYPSGA PSVCCALCQA ITTVPPPAPV MEMAHLICGG CRTLLMYTRN  60
ADTVRCSCCS TVNLVRPVNN IAHVSCGQCR TTLMYPYGAP SVKCAICHYI TNTGMNTVAP  120
TPSPMPTSSG SSYNAPPSGS SYNAPPPTSA PTSRPQNVTV VVENPMTVDE KGKLVSNVVV  180
GVTTGK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.480420.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ASS2
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g43840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g43840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115690.0AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628086.11e-130protein LOL3
SwissprotQ6ASS21e-131LOL3_ORYSJ; Protein LOL3
TrEMBLB8AN391e-129B8AN39_ORYSI; Uncharacterized protein
TrEMBLI1PDS81e-129I1PDS8_ORYGL; Uncharacterized protein
STRINGOS03T0639600-011e-129(Oryza sativa)
STRINGORGLA03G0252400.11e-129(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.74e-56LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]