PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g44710.1
Common NameFIL2, LOC4333584, Os03g0650000, YAB2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 187aa    MW: 21163.1 Da    PI: 9.24
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g44710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY257.42.2e-7941612170
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +++ ++e+vCyv+CnfCnti+avsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s+
  LOC_Os03g44710.1   4 QIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSR 88 
                       67889*******************************************************9........899********************* PP

             YABBY  95 svssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + ++ ++ s+n++e++ +    +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  LOC_Os03g44710.1  89 YGRVPMMfSKNDTEHMLH----VRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
                       ***99988999*****98....9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.8E-739161IPR006780YABBY protein
SuperFamilySSF470951.09E-8101155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5107155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY  120
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESSKKL DEAIGAPSPQ  180
KVQRLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.169370.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172347010.0
Expression AtlasQ10FZ7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g44710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g44710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880111.11e-139protein YABBY 2
SwissprotQ10FZ71e-140YAB2_ORYSJ; Protein YABBY 2
TrEMBLB7EHY11e-138B7EHY1_ORYSJ; YABBY
TrEMBLB8ANI41e-138B8ANI4_ORYSI; Uncharacterized protein
STRINGOS03T0650000-011e-138(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-56YABBY family protein
Publications ? help Back to Top
  1. Sawa S, et al.
    FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains.
    Genes Dev., 1999. 13(9): p. 1079-88
    [PMID:10323860]
  2. Toriba T, et al.
    Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
    Mol. Genet. Genomics, 2007. 277(5): p. 457-68
    [PMID:17216490]