PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g44710.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 123aa    MW: 13833.9 Da    PI: 7.9372
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g44710.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY121.71.1e-3741092114
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +++ ++e+vCyv+CnfCnti+avsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s+
  LOC_Os03g44710.3   4 QIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSR 88 
                       67889*******************************************************9........899********************* PP

             YABBY  95 svssekl.senedeevprvpp 114
                       + ++ ++ s+n++e++ +v  
  LOC_Os03g44710.3  89 YGRVPMMfSKNDTEHMLHVRL 109
                       ***99988999****998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-30991IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSAQIVPAPE HVCYVHCNFC NTIFAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRLG AFPEHPFRVR  120
LP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.169370.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172347010.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g44710.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g44710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740140.0AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds.
GenBankAF0987530.0AF098753.1 Oryza sativa clone FIL2 unknown mRNA.
GenBankAK0702580.0AK070258.1 Oryza sativa Japonica Group cDNA clone:J023044A02, full insert sequence.
GenBankAK0704790.0AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence.
GenBankEU8469820.0EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880111.12e-75protein YABBY 2
SwissprotQ10FZ71e-76YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0E0GR302e-73A0A0E0GR30_ORYNI; Uncharacterized protein
TrEMBLB7EHY14e-74B7EHY1_ORYSJ; YABBY
TrEMBLB8ANI44e-74B8ANI4_ORYSI; Uncharacterized protein
STRINGOS03T0650000-016e-75(Oryza sativa)
STRINGONIVA03G28660.23e-74(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-19YABBY family protein