PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g45450.1
Common NameLOC4333621, OSJNBa0075A22.16
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 149aa    MW: 15511.9 Da    PI: 7.6222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g45450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-2154111258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                       +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  LOC_Os03g45450.1  54 EDGYEWKKYGQKFIKNIQKNRSYFRCRDQRCGAKKKVEWHPHDPGLnLRVVYDGAHHH 111
                       7******************************************986479********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.248114IPR003657WRKY domain
SuperFamilySSF1182904.45E-2149114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-2450114IPR003657WRKY domain
SMARTSM007741.5E-2153113IPR003657WRKY domain
PfamPF031064.4E-2054111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASNSQTTTT GAGGGRGQGD DEEPTPTPPP APPPETAPST VGGGGDGVQL VMPEDGYEWK  60
KYGQKFIKNI QKNRSYFRCR DQRCGAKKKV EWHPHDPGLN LRVVYDGAHH HGSPSSAAGE  120
GGTSAAAAAN QYDLSTQYFG GAGGPRSQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7Y0A8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g45450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g45450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1338591e-125AC133859.4 Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence.
GenBankAP0149591e-125AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-125CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629814.11e-106probable WRKY transcription factor 2 isoform X1
TrEMBLQ7Y0A81e-105Q7Y0A8_ORYSJ; DNA-binding protein, putative, expressed
STRINGOS03T0657400-005e-98(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-12WRKY DNA-binding protein 57