PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g45750.1
Common NameLOC4333627, OsJ_11977, OSJNBb0065L20.23
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 215aa    MW: 22013 Da    PI: 8.8896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g45750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.26.6e-44411401100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+
  LOC_Os03g45750.1  41 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQ 133
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       lal+++e
  LOC_Os03g45750.1 134 LALAQAE 140
                       ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.74740141IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-4341138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRDVVVAVGG GTKAASRQQG QGGVTLAAAA AGSGSGSAAS PCAACKLLRR RCAAGCVFAP  60
YFPPGEPHKF ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPIYGCVGAI  120
SSLQQQVEAL QAQLALAQAE MVRLRMSNDY IGRRLRARGC GGGGGGGGGS TTTTTGSPSS  180
MSSPAKTAEP EPLCKPTPEL DMVVDQPDFG FWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-50311431113LOB family transfactor Ramosa2.1
5ly0_B2e-50311431113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.891890.0callus| flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329815730.0
Expression AtlasQ75GP0-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g45750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g45750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1391740.0AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629600.11e-155LOB domain-containing protein 4
SwissprotQ8LBW31e-57LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0D9ZI361e-154A0A0D9ZI36_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0NZ401e-154A0A0E0NZ40_ORYRU; Uncharacterized protein
TrEMBLA2XKA01e-154A2XKA0_ORYSI; Uncharacterized protein
TrEMBLQ75GP01e-154Q75GP0_ORYSJ; Expressed protein
STRINGOGLUM04G05130.11e-155(Oryza glumipatula)
STRINGORUFI03G29410.11e-155(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-35LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]