PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os03g47200.1

Common Name

Os03g0675400, Os03g47200, OSNPB_030675400

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 157aa MW: 17150.6 Da PI: 12.3704

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os03g47200.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5e-11	50	94	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + +r rrk++NRe+ArrsR+RK+ ++eL+ +++ L N++L+ LOC_Os03g47200.1 50 DERRLRRKISNRESARRSRARKQRHLDELRARAERLRRCNRELAA 94 66899***********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.3E-8	42	95	No hit	No description
SMART	SM00338	4.4E-6	48	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.208	50	95	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-7	52	93	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.75E-8	52	96	No hit	No description
PROSITE pattern	PS00036	0	55	70	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MPLMHLLAPP AQAFVVAPPR VAPAFDGAAA PPREDDPAAD QPPEREADAD ERRLRRKISN 60 RESARRSRAR KQRHLDELRA RAERLRRCNR ELAARGHAAR GRAGLVRLAN AWLRAEAAAL 120 TRRLAAARRA IALGQLYRPA AAAAAASGRS SRRSPR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	71	RRSRARKQ

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q9FRG2

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os03g47200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os03g47200

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC079830	0.0	AC079830.9 Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q9FRG2	1e-96	Q9FRG2_ORYSJ; BZIP transcription factor family protein
STRING	ORUFI03G30430.1	9e-90	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27211	4	5

Link Out ? help Back to Top
Phytozome	LOC_Os03g47200.1