PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g47970.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 258aa    MW: 27905.1 Da    PI: 4.3154
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g47970.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16215249133
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                       C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  LOC_Os03g47970.2 215 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 249
                       ********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.5E-1074109IPR010399Tify domain
PROSITE profilePS5132014.98574109IPR010399Tify domain
PfamPF062001.7E-1277108IPR010399Tify domain
PROSITE profilePS5101713.364143185IPR010402CCT domain
PfamPF062039.1E-15143183IPR010402CCT domain
SMARTSM004016.4E-5209257IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-9212250No hitNo description
Gene3DG3DSA:3.30.50.107.2E-14214249IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.06E-13214249No hitNo description
PfamPF003203.6E-14215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPDAAAAAAA AQDADAVMRD APADAAAGGG DNDDDDGDDG TEEDEEEDDD EEGDEEELPP  60
AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV QAVLLLLGRS EMPPGLANMV  120
LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG  180
QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN  240
ACGLMWANKV LLHVLMS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.28570.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO428216400.0
Expression AtlasQ10F24-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g47970.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g47970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050250.0AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.10.0GATA transcription factor 18
SwissprotQ10F250.0GAT18_ORYSJ; GATA transcription factor 18
TrEMBLQ10F240.0Q10F24_ORYSJ; GATA transcription factor 27, putative, expressed
STRINGORUFI03G31080.10.0(Oryza rufipogon)
STRINGOS03T0684000-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-64ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]