PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g55590.4
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 199aa    MW: 21779.9 Da    PI: 10.2137
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g55590.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.68.6e-11146170125
           G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                       k r++W+peLH++Fv a++qLGG++
  LOC_Os03g55590.4 146 KSRRCWSPELHRQFVAALQQLGGPQ 170
                       68*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-8144170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MNHSFPYLIY SVFDSYPCLI YTVFFMEVLI FIETGRCFRF QNDRRSGSTS PASRLLGGAE  60
ESSSRAVAPP PYFRREERVV LRPAMPLLPP ASHRSPPPAA AAAATAAGDD HRHVVASSFA  120
TAVPSPVPAA LSLQAQAQQQ QQQARKSRRC WSPELHRQFV AALQQLGGPQ GILHGRPSFS  180
PSIICKDHRK SSYLVVPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.254530.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329908340.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g55590.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g55590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0990430.0AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631206.12e-84transcription factor HHO5
TrEMBLA0A0D3FPG04e-83A0A0D3FPG0_9ORYZ; Uncharacterized protein
TrEMBLA3AMZ54e-84A3AMZ5_ORYSJ; Uncharacterized protein
STRINGOBART03G35220.17e-84(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.12e-09G2-like family protein