PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g55990.2
Common NameLOC4334253
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 227aa    MW: 24834.1 Da    PI: 9.677
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g55990.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.7e-08170218548
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWF 48 
                         +t+ q+e+Le++++++++p  ++r++L  +l    +++ +q +kvWF
  LOC_Os03g55990.2 170 VHYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWF 218
                       679******************************99999987765***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-8148218IPR009057Homeodomain-like
SuperFamilySSF466891.71E-6150220IPR009057Homeodomain-like
CDDcd000862.76E-5168218No hitNo description
PfamPF000466.1E-6170219IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPFPHGGVGP AACAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSTWN TMTVAAEVDA  60
SPDGEERRKQ ACNRTTIYRF LPSFSFFFLS FVSPSHMSGY FFSSSSPDDF TFARNLSGCC  120
CVEGGEGGNF GGGGGRSGGW RQRWRCPMRS GSGSDGSGYD KAGMDSGKYV HYTPGQVEAL  180
ERVYAECPKP RFSRRQQLLC ELSILANIEP KQKIKVWFPK QKPTNV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.914940.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329854590.0
Expression AtlasQ10EF9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g55990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g55990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072070.0AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBankAC1334500.0AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAK1002500.0AK100250.1 Oryza sativa Japonica Group cDNA clone:J023060H19, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633127.11e-167homeobox-leucine zipper protein ROC4-like
TrEMBLQ10EF91e-165Q10EF9_ORYSJ; Homeobox domain containing protein, expressed
STRINGOS03T0769800-011e-163(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.11e-20HD-ZIP family protein