PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g55990.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 218aa    MW: 23967.5 Da    PI: 10.309
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g55990.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.7e-08145195550
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFqN 50 
                         +t+ q+e+Le++++++++p  ++r++L  +l    +++ +q +kvWF  
  LOC_Os03g55990.3 145 VHYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFPK 195
                       679******************************99999987766*****65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-8123193IPR009057Homeodomain-like
SuperFamilySSF466891.15E-6125196IPR009057Homeodomain-like
CDDcd000865.71E-5143193No hitNo description
PfamPF000464.0E-6145196IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MPFPHGGVGP AACAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSTWN TMTVAAEVDA  60
SPDGEERRKQ ACNRTTIYRF LPSFSFFFLS FVSPSHMSGG EGGNFGGGGG RSGGWRQRWR  120
CPMRSGSGSD GSGYDKAGMD SGKYVHYTPG QVEALERVYA ECPKPRFSRR QQLLCELSIL  180
ANIEPKQKIK VWFPKQKVSK SMQGYTIKLV CLLCVWL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.67550.0callus| flower| leaf| panicle| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g55990.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g55990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418320.0AK241832.1 Oryza sativa Japonica Group cDNA, clone: J065213C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633127.11e-104homeobox-leucine zipper protein ROC4-like
TrEMBLB9F5W91e-143B9F5W9_ORYSJ; Uncharacterized protein
STRINGOS03T0769800-011e-119(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.16e-21HD-ZIP family protein