PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g56010.1
Common NameLOC4334255, Os03g0770000, OSNPB_030770000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 166aa    MW: 18478.8 Da    PI: 11.2724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g56010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.92.6e-1465114150
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                       e+e++r+rrk +NR++ArrsR+RK++++eeL+ +++ L aeN++L+ +l 
  LOC_Os03g56010.1  65 EEERRRQRRKVSNRLSARRSRARKQQRLEELRGESARLRAENRELAARLH 114
                       7899*****************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-1061115No hitNo description
SMARTSM003381.0E-964129IPR004827Basic-leucine zipper domain
PfamPF001701.1E-965114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.88767118IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.03E-869116No hitNo description
PROSITE patternPS0003607287IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MLSVQEALDF DLDAMTSGFG FTPWAADTCP TLEQLMASSA SPSPSSSLDD NAAAAEEENG  60
EVEEEEERRR QRRKVSNRLS ARRSRARKQQ RLEELRGESA RLRAENRELA ARLHAVARHG  120
LAARCQNARL RAEAAALARR LLALQRLARG RHMMITASPP QFSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRSRARKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.865420.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154556000.0
Expression AtlasA0A0N7KI44-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g56010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g56010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072070.0AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence.
GenBankAC1334500.0AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630261.11e-112ocs element-binding factor 1
TrEMBLA0A0N7KI441e-110A0A0N7KI44_ORYSJ; Os03g0770000 protein
STRINGOS03T0770000-001e-111(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429
Representative plantOGRP1264445