PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g60120.1
Common NameLOC4334558, Os03g0815800, OSJNBa0094J08.32, OSJNBb0042K11.4, OSNPB_030815800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 242aa    MW: 25487 Da    PI: 10.8382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g60120.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1881130255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +gr++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  LOC_Os03g60120.1  81 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 130
                       69*******.**********8.....556**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-1880138No hitNo description
SuperFamilySSF541713.99E-2081138IPR016177DNA-binding domain
PROSITE profilePS5103222.64281138IPR001471AP2/ERF domain
SMARTSM003807.9E-3281144IPR001471AP2/ERF domain
PfamPF008476.6E-1281130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2881139IPR001471AP2/ERF domain
PRINTSPR003673.5E-108293IPR001471AP2/ERF domain
PRINTSPR003673.5E-10104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGTNPSLHEL AAGAAPRGRV VRILVRDADA TDSSSSEDEA VAVAQPRPRR RGKVGGGGGG  60
GGGVKRRVME AGAGEARPTA RFRGVRQRPW GRFAAEIRDP HLRRRLWLGT FDTAEEAAAA  120
YDAASVRLRG SSAATNFASV RCYSLPPELP KPTISPPEAA VRPITLPIGT AKPTLLPRVK  180
EEGESCGGRV KEEASSCEVQ VLAPEPMWTM ISGKRKKRSG CGTRVRAFHA VSACVEEVGG  240
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1882137662ATERF1
3gcc_A1e-1882137662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.142990.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329766880.0
Expression AtlasQ84TW0-
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g60120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g60120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330070.0AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391720.0AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0682520.0AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCU4062130.0CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.11e-170ethylene-responsive transcription factor CRF5
SwissprotQ9SUE38e-28CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0E0P3161e-169A0A0E0P316_ORYRU; Uncharacterized protein
TrEMBLQ84TW01e-169Q84TW0_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI03G40350.11e-170(Oryza rufipogon)
STRINGOS03T0815800-011e-170(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-19ERF domain protein 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]