PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g60570.1
Common NameLOC4334593, OJ1754_E06.20, Os03g0820400, OSNPB_030820400, ZFP37
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 145aa    MW: 14986.1 Da    PI: 10.3245
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g60570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  LOC_Os03g60570.1 45 FVCKTCSRAFPSFQALGGHRTSH 67
                      89**********99998888777 PP
2zf-C2H214.69.8e-05100122123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg+ F     L  H+r+H
  LOC_Os03g60570.1 100 HECHICGQGFEMGQALGGHMRRH 122
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.514567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6814572IPR007087Zinc finger, C2H2
PfamPF139126.1E-114569IPR007087Zinc finger, C2H2
SuperFamilySSF576677.47E-74567No hitNo description
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576677.47E-795122No hitNo description
PfamPF139127.2E-1199125IPR007087Zinc finger, C2H2
SMARTSM003550.23100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTKHPRDGEV ISLSLSLTLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL  60
GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR  120
RHREEAAAAA AAVHAPPVLL ELFV*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ84TB8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g60570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g60570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044330.0AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK1196900.0AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864730.0AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds.
GenBankAY3058640.0AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331400.0CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence.
GenBankEU2808990.0EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629272.15e-99zinc finger protein ZAT12
TrEMBLA2XNF61e-97A2XNF6_ORYSI; Zinc finger protein
TrEMBLQ84TB81e-97Q84TB8_ORYSJ; C2H2 transcription factor
STRINGOS03T0820400-012e-98(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1190434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-15C2H2 family protein
Publications ? help Back to Top
  1. Huang J,Wang J,Zhang H
    Rice ZFP15 gene encoding for a novel C2H2-type zinc finger protein lacking DLN box, is regulated by spike development but not by abiotic stresses.
    Mol. Biol. Rep., 2005. 32(3): p. 177-83
    [PMID:16172918]