PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g62470.1
Common NameOSJNBa0075M12.16
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 132aa    MW: 14594.4 Da    PI: 9.5997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g62470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.56.5e-2081241109
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknr.atksgyWk 84 
                       l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P +L         ++++ + wyfF++ + ++++  + r++r +  +++Wk
  LOC_Os03g62470.1   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPTELVGehrpapGTHGSGSVWYFFCSPRYTSKRkaSGRRQRaVGGESVWK 99 
                       579************************999.89**************733567665556778******97655543113355552667999** PP

               NAM  85 atgkdkevlskkgelvglkktLvfy 109
                       + g +k+v+ ++g+ vg  + + ++
  LOC_Os03g62470.1 100 SEGGKKAVIGADGRRVGYLQKFSYH 124
                       *****************99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-266128IPR003441NAC domain
PROSITE profilePS5100524.538131IPR003441NAC domain
PfamPF023652.5E-1110126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP TELVGEHRPA  60
PGTHGSGSVW YFFCSPRYTS KRKASGRRQR AVGGESVWKS EGGKKAVIGA DGRRVGYLQK  120
FSYHYTGQGH L*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AVQ6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g62470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g62470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.14e-90NAC transcription factor NAM-2
TrEMBLQ6AVQ63e-92Q6AVQ6_ORYSJ; No apical meristem protein
STRINGORGLA03G0372600.17e-80(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Representative plantOGRP1189925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-15NAC family protein