PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g64260.1
Common NameLOC4334864, Os03g0860100, OSNPB_030860100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 226aa    MW: 24165 Da    PI: 6.5094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g64260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1880129355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr ++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  LOC_Os03g64260.1  80 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEEAALAYDQAAFAMRG 129
                       79******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-3679143IPR001471AP2/ERF domain
PROSITE profilePS5103222.68279137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-3079138IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2280139IPR016177DNA-binding domain
PRINTSPR003673.6E-108091IPR001471AP2/ERF domain
PfamPF008471.8E-1380129IPR001471AP2/ERF domain
CDDcd000184.60E-2980137No hitNo description
PRINTSPR003673.6E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MHCCMSLHPH RRHGDGDVDG SASGSGSARL TAGLINFLES RRAGAMSTTN SSSSVSVPAM  60
DAHGQEEEEE PMQVQQQQAF RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF DSAEEAALAY  120
DQAAFAMRGS AAVLNFPMEQ VRRSMDMSLL QEGASPVVAL KRRHSMRAAA AGRRRKSAAP  180
APADQEGGGG VMELEDLGPD YLEELLAASQ PIDITCCTSP SHHSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-28801391574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160175KRRHSMRAAAAGRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.561440.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO428217050.0
Expression AtlasQ10A97-
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g64260.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g64260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0922630.0AC092263.7 Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence.
GenBankAK1093900.0AK109390.2 Oryza sativa Japonica Group cDNA clone:006-211-G07, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629379.11e-165ethylene-responsive transcription factor 15
SwissprotA0A3Q7I5Y97e-50ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLQ10A971e-164Q10A97_ORYSJ; AP2 domain containing protein, expressed
STRINGOS03T0860100-011e-165(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-30ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]