PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g04300.1
Common NameOSJNBa0095H06.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 199aa    MW: 21102.9 Da    PI: 6.0916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g04300.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.45.8e-082231535
                      -TT-SS-EEEEEE-ST.T---E CS
              WRKY 15 vkgsefprsYYrCtsa.gCpvk 35
                       kg+++pr+YYrCt a gCp+ 
  LOC_Os04g04300.1  2 AKGNPCPRAYYRCTVAvGCPAA 23
                      59*************99**985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.12122IPR003657WRKY domain
SMARTSM007740.006137IPR003657WRKY domain
PfamPF031061.3E-4223IPR003657WRKY domain
SuperFamilySSF1182904.32E-5223IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-5223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAKGNPCPRA YYRCTVAVGC PAAVAKSSSA NAATTEMLEL LRDFSDYSSF NSDISSELER  60
LAAAVTPRSD APQVAAVDLN GGSSSSSRLT TTTPPPLLQL GCRQALPFIV PTGRCASLAA  120
VVEEISGRRA SPPWMSAAGD AVAVIPSYEN HVTEVSTCVK HSSSHTDIDR LRLSITTPFH  180
DYDVITLIDK IINPLFWC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274143e-39callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166414913e-39
Expression AtlasQ7XS15-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g04300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g04300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629850.0AL662985.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P4W41e-142A0A0E0P4W4_ORYRU; Uncharacterized protein
TrEMBLQ7XS151e-142Q7XS15_ORYSJ; OSJNBa0095H06.3 protein
STRINGORUFI04G01750.11e-143(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2342744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-09WRKY family protein