PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g11830.1
Common NameOs04g0194600, OSJNBa0040D17.14, OSJNBb0026E15.1, PCF1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 185aa    MW: 18905.2 Da    PI: 6.9728
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g11830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1073e-3352127374
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 
                        k  ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++      
  LOC_Os04g11830.1  52 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavA 127
                       577899*********************************************************7666633322221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-2856130IPR005333Transcription factor, TCP
PROSITE profilePS5136925.84857111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMASSSDLIL YNLVPAQPLN PSAIPNPNPD LSIAAAEPPS SDGATPRRVR PRKSPSSSDR  60
HSKVAGRGRR VRIPAMVAAR VFQLTRELGH RTDGETIEWL LRQAEPSIIA ATGTGVTPEE  120
APPAAVAIGS SSVAAAAAAG GHGGAFVHVP YYTALLMQPP NADEPPMASA ASASGTTAAD  180
ENNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652RRVRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538070.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853890.0
Expression AtlasO23875-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g11830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g11830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6070080.0AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence.
GenBankAL6629650.0AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633587.11e-128transcription factor PCF1
SwissprotO238751e-127PCF1_ORYSJ; Transcription factor PCF1
TrEMBLI1PJA91e-126I1PJA9_ORYGL; Uncharacterized protein
STRINGORGLA04G0027800.11e-127(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.18e-28TCP family protein
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]
  2. Kosugi S,Ohashi Y
    PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.
    Plant Cell, 1997. 9(9): p. 1607-19
    [PMID:9338963]